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• Introduction to Unix Shell
  • Part 1, Intro to the Shell
  • Part 2, More Intro to the Shell
  • Part 3, Working with Files
  • Part 4, Pipes and Variables
  • Part 5, Loops and Scripts
  • Part 6, Introduction to Slurm

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• Workflow Overview
• Part 1 - Introduction to Bioinformatics Basics
  • Quality Control and Trimming
  • Alignment

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• Part 2 - Differential Expression Analysis
  • Intro and Counting
  • DESeq Basics
  • Intermediate DESeq & RStudio
• Part 3 - Basic Multiomics
  • Peak Calling and Multiomic Comparisons

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These lessons are based and adapted from the Data Carpentry Shell Genomics